Mohd, not surprised the efficiency is around 50% as it's a low flow high head multi-stage pump unit and typical /normal for this flow and head. The passage ways thru' the impeller will be very small in area which is subject to friction losses, flow eddies etc and probably with other than the ideal surface finish you can expect and get on larger impellers, all of which reduce hydraulic efficiency.
However, look at it this way, as it goes the job well for you by achieving the flow and head you want, it therefore gets 10 /10 marks - - in my books 10/10 = 100%
It is a capital mistake to theorise before one has data. Insensibly one begins to twist facts to suit theories, instead of theories to suit facts. (Sherlock Holmes - A Scandal in Bohemia.)