In that some beams have three rows of studs, it cannot be a nono under the AISC to weld away from the beam centerline. However, the flange is being used to transfer shearing stresses to the web now too, not just for bending. So there is now a combination of stresses to be dealt with.
As for the contractor, I do not know what your directions were to him regarding inspections, but if you haven't already, I would have a serious discussion with him, making him an offer regarding future inspections that he cannot refuse.
Or, if you are not sure if enough studs were placed, and you have the contractural authority, make him pay for an X-Ray, or some other means of testing to prove to you what is there. However, this will not tell you if the quality of the weld to the flange is good.
In the end it is your call in how to best provide the owner with a safe product.
Mike McCann
MMC Engineering
Motto: KISS
Motivation: Don't ask