You can do Crl+J and from class selection dialog Select type->face then click Detail filtering (at the bottom of the dialog) and Highlight only Cylinder, give OK and pick the hole faces by putting window, deselct other cylidrical faces that u don't want.
Yes, I agree that there should have been some option to define criteria (by user) in the Class selection dialog. Criterias can be
All faces (edges) having some diameter (>=, <=, == )
All blend faces having same (range of values) blend value. and so on.