virtualvision,
back to your original question, yes you need to get the architect to specifically state column location on their drawings. If you have problems getting to do this in a timely manner then you need to send them an email stating that this is delaying the design process and copy in the project manager/client.
As far as analysis is concerned, the column is often assumed pinnned at the base and is therefore taken as a point load on the transfer beam. Be aware that if you dont include the beam in the analysis then the sag of the beam will change the actual moments e.t.c. compared to a rigid fixed support, particularly if some of the columns have other columns under them.
So it is better to analyse the whole frame at once if you can.
One thing that has not been asked, is this in a seismic region?