I cannot speak to the accuracy of the programs; however, I can say what it could be.
App. D doesn't quite fit for anchors on wood sill plates, and often isn't needed. Here is AWC's FAQ on the matter.
That links to the study done that shows how App. D relates.
This is now being adopted by codes and standards. The CA code states...
2305.1.4 Sill plate anchor bolts. [BSC, DSA-SS, DSA-SS/
CC and OSHPD 1, 2, 3 & 4J As specified in Section
1908.1.31 modifications to ACI 318, the allowable lateral
design strength for sill plate anchor bolts in shear parallel
to grain is permitted to be determined using the lateral
design value for a bolt attaching a wood sill plate to concrete,
as specified in AF &PA NDS Table 11 E, provided the
anchor bolts comply with all of the following:
1. The maximum anchor bolt diameter is 5/8 inches (16
mm).
2. The anchor bolt is embedded at least 7 inches (178
mm) into concrete.
3. The anchor bolt is located a minimum of 21/2 anchor
diameters from any concrete edge that is parallel to
the sill plate; and
4. The anchor bolt is located a minimum of 15 anchor
diameters from any concrete end that is perpendicular to the sill plate.
The next Wind and Seismic provisions for the NDS will have similar language, and I wouldn't be surprised if the next IBC is similar.