sponcyv....in this age of design/construction defect litigation, you have an obligation to design at least to the code minimums and YOUR standard of care, not the owner's or the contractor's. I just spent 3 days testifying in direct examination and 1 day in cross examination in a large construction defect trial.....so maybe I'm a little jaded on the subject, but please be careful for your liability sake.
If the code expects a roof, then design a roof (See Chapter 15, IBC). No more, no less. If they want to "value engineer" (btw...I hate that term!)your design away and you're not involved in construction/contract administration, then so be it...you won't know. If you are involved in C/CA, then you will have an obligation to write a letter recommending against their actions, but you still won't likely be able to do anything about it....the difference is that you will have met your standard of care in two respects...the design and the obligation to warn against code violations.
One thing to keep in mind....if they get a permit to construct based on your proper design and they fundamentally change it, there might be a violation of the code from that action alone, without regard to what they change it to. The administrative portion of the code (Chapter 1) requires resubmittal to the AHJ (Authority Having Jurisdiction) of design changes.
Good luck.