ME3239...
NOTE1.
AL5052 and AL6061... are poor ways to represent these alloys... AL prefix is typically used by scientists or scholars. Engineers see this terminology as 'incomplete/non-descriptive' for these materials.
Here are more typical engineering representations... 'AL' prefix being unnecessary because of the alloy designations...
5052-O, -H32, -H34, -H38 [-H 'strain-hardened conditions]
6061-T4, -T6, -O [HT to -T42 or -T62] [-T* is OEM or user heat treatments for strength]
NOTE2.
Can we assume that the black-dyed anodic finish is intended to be both functional [for abrasion and corrosion] and decorative [attractive/clean appearance]?
Me-thinks... for thin sheet metal... a film sulfuric anodic coating... 0.0004-to-0.0008-inch thick, dyed black and 'sealed'... will likely have very small [negligible] effect on bare aluminum heat sink performance... in the 'real world'. But do be cautious...
6061-T* and 5052-H* are a bit non-standard to anodize and the vendor has to have experience to control the finish. Reason: 6061-T* and 5052-H* alloys/tempers-conditions have amazing 'natural corrosion resistance'... often are simply 'alodined' [conversion coated]... or left bare relying-on their naturally formed oxide film for protection.
Electrical grounding-bonding will be specifically poorer thru any anodic coating... so MUST remove [abrade-off] the anodic coating to attain bare metal contact, at points as needed.
NOTE3.
In the design situation as described, then suggest you consider the following 'light reading' for background 'smarts'...
ARINC 728-* AVIONICS REFRIGERATION COOLING SYSTEM (ARCS)
SAE AIR64 ELECTRICAL AND ELECTRONIC EQUIPMENT COOLING IN COMMERCIAL TRANSPORTS
SAE AIR1277 COOLING OF MILITARY AVIONIC EQUIPMENT
AIR1957 HEAT SINKS FOR AIRBORNE VEHICLES
ARP987 THE CONTROL OF EXCESS HUMIDITY IN AVIONICS COOLING
DESC-DWG-85136 HEAT SINKS, ELECTRICAL-ELECTRONIC COMPONENT, FIN STOCK, ALUMINUM ALLOY
...and any associated corporate documents You may have privy to.
Regards, Wil Taylor
o Trust - But Verify!
o We believe to be true what we prefer to be true. [Unknown]
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