The process that I have used in the past is based on the language in ACI 10.10 (I think that's the paragraph) - where they essentially say that you HAVE to do a full blown "rational" second order design UNLESS you use their approximate methods (delta magnification).
If you model your frame with end joints only, such as the following model:
j========j
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j j
and run a Pdelta analysis, you will ONLY get the primary second order effects due to frame sway. What the ACI code requires, though, is a full consideration of ALL second order effects.
There are two sources of second order effects.
1. Frame second order effects (Pdelta due to the beam end joints swaying sideways and the axial load causing an additional moment on the frame).
2. Member second order effects (Pdelta due to curvature in axial loaded members along their length)
Both of these are affected by loss of stiffness in the columns and beams due to cracking.
So I model the beam as a full, single member (like the sketch above) but I model the columns with 1 ft. little segments (lots of joints along the length).
I run a first order analysis and verify, at service loads, whether any sections have cracked, calculating Mcr considering axial load effects on Mcr (compression elevates the Mcr).
Then, I adjust the A, Ix of the beams and columns and cycle through the analysis again, until I get convergence.
Then, I run the factored combinations and get full Pu and Mu values and design the column (no use of delta's are necessary as they are in the model).
The numerous joints along the length of the columns create little Pdelta effects as the RISA program uses the deflected position of these joints for the subsequent runs until the interation stops. This successfully models the full second order effects.
Sounds like a lot of work, but compare that to the head exploding duct tape method of the ACI deltas and I'd take this every time. With the ACI method, you have to calculate a delta for each member, under each load combination - this results, sometimes, in hundreds of deltas in a single model.
One last warning, though; ACI also added a statement in Chapter 10.10 saying something to the effect that this "rational analysis" must be backed up with tests. I've called various experts on this and no one seems to know what this means in actuality.