Brian, having some problems with your response.
"The axle is locked to being perpendicular to the torque tube in every dimension, which rules out being able to tune the geometry for roll understeer or roll oversteer...."
For what purpose are you going to use roll steer? Oh, there are times when it comes in handy. I remember the introduction of the torsion bars in the '57 Chrysler line, for instance. The press attributed the improved handling to these new magic bars, but it should have been attributed to the rear leaf redesign, which promoted roll oversteer.
Remember, roll steer does not affect tire loading. All it changes is the steering wheel angle. This is pointed out in one of the problems (included at my urging) in the student workbook which accompanies the Millikens' book.
In other words, if an oval track car pushes, you can add as much roll oversteer as you like, but it will still go into the outside wall nose first. The driver will just be holding the steering wheel in a different position as he crashes.
I don't see this as a fault worthy of comment.
"The torque tube pivot point is locked to being where the end of the gearbox is, as opposed to being able to select how the pivots actuate in order to get anti-squat during acceleration or anti-lift during braking (you will get anti-squat / anti-lift with torque tube, but you get what you get ... unless the torque tube mounting is separated from the gearbox to allow the length to be tuned, see 4th-gen Camaro)"
I obviously failed in explaining the use of a torque tube with an open driveshaft. The forward end of the torque tube would have absolutely no relationship to the end of the transmission tailshaft housing. Since it would be offset to the right of the driveshaft, it could be positioned to give any desired antisquat percentage. You wouldn't want adjustment in a production car, of course, but, during development, an adjustable front bracket should suffice.
Again, this is not a shortcoming of the offset torque tube.
"Chassis and suspension related loadings have to be absorbed by the engine/gearbox mountings and the various vibration or torque related motions of the engine/gearbox can't be separated from the suspension actions."
Again, the offset torque tube would need have no relationship with engine/gearbox loadings.
"But, the torque arm is really long, adds a bunch of weight, still needs a trailing arm on either side and a Panhard rod...."
All true, but, remember, we're talking about "what might have been" in the evolution of the RWD beam axle car. The few production examples remaining will soon be gone. But, when you consider that the additional trailing arms would not be required with the offset torque tube, I find it difficult to understand how something as heavy and complex as the torque arm was ever considered.
I, too, appreciate the simplicity of the 3link. But, when you consider that a torque tube is merely an extension of the axle housing, it is, in fact, a "zerolink" suspension. (Can't count the Panhard, of course.) Can't get much simpler than that.