I'm a bit confused about the magnitude of your claimed plastic deformations.
Assuming an elastic modulus of 69 GPa, and a yield strength of 276 MPa, your elastically recoverable deformation on a 45 mm long bar should be about 276/69000*45 = 0.18 mm.
Strain at 300 MPa is about 0.03 (from the stress-strain curve for 6061-T6 as supplied with Strand7), so the total compression of a 45 mm long bar at 300 MPa axial load should be about 0.03*45 = 1.35 mm.
Take away the elastically recoverable deformation, and I would expect a permanent deformation of about 1.17 mm after unloading.
One thing to check - the stress / strain curve for 6061-T6 is virtually horizontal at 300 MPa, so very small increments of axial load once you are up in this territory will result in large increases in displacement. (The strain almost doubles as the stress rises from 297.9 MPa to 306.8 MPa.) Or to put this in real-world terms - the actual stress strain curve for your sample will not perfectly match the supplied data, and once you are up in the range of 300 MPa, very large additional deformations can arise with very small load increments.
Strain Stress (MPa)
0.000 0.0
0.004 268.9
0.006 281.3
0.012 289.6
0.028 297.9
0.050 306.8
0.070 310.3
0.080 310.3