We seem to have a problem. That everyone is facing so it might be best to try to apply some scientific testing to this. I would propose some systematic testing to try to pinpoint the problem. Here is a rough idea of what I am thinking:
Bubbles caused in the resin/epoxy matrix could be caused by three things:
1.trapped air
2.trapped gas or volatile
3. Vacuum bubble
From these I would tend to believe that trapped air would be the best choice followed by a trapped gas or volatile.
To test your system look for air leaks. I did a test with a layup of breather fabric and water colored with different food coloring to look for leaks. I even submerged the whole system in water to test. The results were interesting but not totally conclusive because the surface tension of the water can plug small leaks. The use of smoke or some other aerosol would be better.
Another thing is to look at the basics of moving a liquid through a media with vacuum or pressure. Is there an even resin/epoxy front through the system? Use peelply, flow media, and breather to maintain even flow of resin/epoxy and distribution of vacuum through the system. Try different viscosity resin/epoxy and different temperatures. Practice releasing and closing the infusion tube to eliminate air. Try different fabric suppliers but be careful when testing with glass and then going to carbon as they most likely have different sizing and wet out characteristics. Also don't assume that because your system works with polyester/vinyl ester that it is an easy switch to epoxy. The polyester/vinyl ester matrix has a relatively low viscosity and surface tension which allows it to wet out quickly and then it gels relatively fast. Epoxies take a bit more R&D to get just right and you may have to work with different temps to reduce the viscosity and/or improve the gel time. Be cautious of your mould release and mould material max temps.
Also look at chemical interactions. Are dust, dirt, oils from your skin, release chemicals getting on your fabric and causing a problem? Fabrics are coated to work with different resin systems (I believe its called sizing) is your fabric sizing suitable for your resin/epoxy matrix?
My advice, start with vacuum and leak tests. Then work on resin/epoxy tests. Try different ones and at different temperatures. Be careful with polyester/vinyl esters when trying different temps as they can set up fast. Also be aware of your gel time and try to match it with the size of your part and rate of infusion. If your part is small and you can infuse in seconds but have to wait hours for it to gel you have a higher probabilty of getting a leak and pulling in a bubble.
So a few more basics. If you have bubbles in one area of the part, trace the bubbles and look for a leak or an area that does not have good vacuum. If it is evenly distributed throughout the part then you may have a major leak or more likely the resin/epoxy has dissolved gases, you have impurities in your components or chemical interactions.
Try a wet layup with a brush but pull vacuum as if you infused to see if the resin/epoxy is degassing or there are chemical interactions not related to infusing, this assumes that you can get a tight vacuum without the infusion tube.
Keep your system tight, keep everything clean, try different components, keep good notes, and good luck with your projects.
Mike