This data is indeed difficult to find. The program SF Pressure Drop gives an absolute roughness of 0.0016 mm. The program Pipe Flow Wizard gives a value for neoprene as 0.0818 mm. This sounds high because it is about double the value for commercial steel pipe. In my own hand-written notes I found the value 0.005 mm, but without a reference. My bad. The Fluide Design reference you gave had a value of 0.025 mm.
From this data I would guess that a realistic value is somewhere between 0.0016 mm and 0.025 mm. Perhaps that is how I came to a value of 0.005 for my own use.
This seems like a very wide range and it may appear that a sound design is not possible. But in fact its not bad at all. It is one of those cases where going back to an old fashioned hand calculation would give a lot of comfort. Luckily for you, because you have a fairly large pipe when you convert the absolute roughness to a relative roughness by dividing by the pipe diameter you get very small numbers. If you plot these on the Moody chart you will see that the lines are all bunched up at the low e/D values, and there is little effect on the friction factor.
As an example, taking a flowrate of 1,000 m
3/h would give a Reynolds number close to 1,000,000 and a velocity of almost 3 m/s. This is probably fairly typical for an actual use. In this case the friction factor for e/D values of 0.0016 and 0.025 mm varies by only 13%. For a fixed flowrate your pressure drop estimate will therefore vary by this 13%, and for a fixed pressure drop your flowrate will vary by the square root, i.e. about 7%. This is probably less uncertainty than some of your other variables.
If the flowrate was less than 1,000 m
3/h the variation would be even less.
With a rubber pipe I would include a fairly conservative safety factor to take into account kinking and wrinkling, couplings and so on. So although it may look as though there is a lot of uncertainty in the data, I believe you can still generate a confident design.
Good luck
Harvey
Katmar Software
Engineering & Risk Analysis Software