What you describe is precisely what I would expect. The spectrum of an ideal implulse train spaced at 1/800 sec intervals is a is an "impulse train" in the frequency domain spaced at intervals of 800 Hz. All peaks will have the same amplitude.
In your case, we can assume that the force being applied to the machine by the punch is a nearly ideal implulse train. If it were possible to measure the applied force, you would see a series of peaks in the spectrum of the force each having the same amplitude.
However, you are measuring the acceleration RESPONSE of the machine at a particular point on the machine body. This response will be 'coloured' by the modal dynamic behaviour of the structure of the whole machine. This means that the peaks in the response will not be all the same amplitude.
I'm sure you are familiar with what a frequency response function (FRF) is: a graph with peaks corresponding to the natural resonant frequencies of the machine. The acceleration response spectrum that you measure on your machine will be the spectrum of the applied force (a train of "impulses" in the frequency domain with equal amplitude) multiplied by the FRF for the machine at the measurement point. So you can see that if one of your "impulses" in the force spectrum happens to coincide with a peak in the FRF then the peak in the response spectrum will be big. If it coincides with a dip in the FRF, then the peak in the response will be small.
I think you are confusing yourself by calling them "harmonics" and thinking "Harmonics usually decrease in amplitude at higher frequencies". If you think purely in the frequency domain, the punch is only putting energy into the structure of the machine at 800 Hz, 1600 Hz, 2400 Hz etc. Therefore, when you measure the response, you are only getting response information out at 800 Hz, 1600 Hz, 2400 Hz etc. The "harmonics" have nothing to do with the dynamic behaviour of the machine, they are present in the input force spectrum and so they are also present in the output response spectrum.
Hmm. Not sure that was very clear! let me know if you want clarification on anything.
M