RS82,
Technically, I would agree with the pump vender. With the same pressure difference between the start and end of a 1/2" or 3/4" tubing lines, the fluid velocity in the 1/2" line will always be higher, and thus exhibit a larger pressure drop.
However, we are talking about tubing and the differences are likely negligible.
If you have an issue with VP margin, you may want to:
1) Double check the clearances. I would consider closing the diametrical clearance of the throat bushing, and opening up the orifice size in the P11 line.
2) Verify the calcs you are using to determine seal chamber pressure as the calculation for flow through a circular annulus and an orifice in series is often misunderstood and over simplified.