I applaud the effort given this is your church and that makes your interest clearer to me. The issue I would have investigating such a problem if I were not somehow attached to the facility is that flooring is probably <$5k (plus maybe $3k for install). Doing a lot of testing one could quickly rack up the replacement value in fees. If it were an engineered floor like Mirage or Kahrs, then its values would be 5 times or more and such an investigation would be more feasible.
Another concern with investigating such a problem like so many of us like to do is this is not a complex problem. It absorbed some moisture, had nowhere to expand, so it buckled. The intent of the underlay is to try to isolate it from slab moisture, and create a "floating floor" that is free to expand and contract. This product is a lot more stable than hardwood so long as it is not exposed to significant moisture changes. I am not aware of the RH fluctuations in Ontario, so you will have to determine if their is need for a extra HVAC items to help stabilize the humidity in that area.
If the install was done correct except for the expansion joints, and you do not have some odd subgrade problem (missing moisture barrier or water table issue) I suggest you cut out an expansion joint and move on with life. I have a German tracksaw that I could cut that out perfectly straight in a very short period of time. Yes, you will need a trim detail to cover the joint. Again, not complicated and standard stuff for a finish carpenter. A few phone calls to a reputable local supplier not related to the project and I bet you will come to a reasonable solution if you want more advice. I have done that and one can tell if they know their stuff by asking questions and listening to the answers. A supplier that deals in hardwood floor re-finishing products might be a good place to start. The owner of the company where I buy my Bona re-finishing products from has always been very helpful.
To determine the fire rating requirements will need to consider the overall size of the occupancy, sprinklers, firewalls (if any), usage and other Part 3 items in the Ontario Building Code. Usually the Architect (or their code consultant) looks after that. If this is a simple reno without such a professional, then you may find the rating requirement in the original drawings if you have them. Having worked at various churches I know they are not usually flush with funds (except some Catholic Churches). Since they selected a laminated floor I am fairly confident your congregation is one of those without extra funds. You may want to leave this alone unless there is someone that can step up and write the cheque to replace it with something that meets the requirements if found to be more stringent.
That was not a great product for this space. I am assuming this is a multi-use area where they use it for a lot of different gatherings. That wear surface is far too thin, and when they move tables and chairs it will scratch. Engineered flooring uses a 5mm wear surface, but this is just a veneer (1/42" +-). I bet in two years they will consider replacing it because it will look awful if this is indeed a high use area.
Good luck and kudos for the effort.