I generally agree with the above.
4-pole switches required, plus a ground electrode and neutral-ground bond at the generator.
"Emergency" = "Life Safety". Your ATS's can supply NEC Article 700 loads only, and cannot serve non-life-safety loads. The generator can serve both life-safety and non-life-safety loads, but separate additional ATS's would be required for non-life-safety loads.
Are these REALLY emergency loads? If you just wanna back up your fridge and TV, not provide emergency lighting, then you can ignore this issue, you're covered by NEC 702 (Optional Standby Systems) rather than 700 (Emergency Systems). Make sure you get this straight, and DON'T use the term "emegency" if it's not life safety ("generator source", "standby source", "standby generator", and "alternate source" might be handy terms to use).
Beware that NEC 700 would require your generator to have sufficient capacity to simultaneously serve all emergency loads from both buildings if this is truely an emergency system.