you've got a simple enough beam (two constant Is) that you don't really need FEA for it.
use the double integration method, section the beam where the section changes,
another idea is to solve the beam bending moments (they don't change with I), then analyze the two different inertias as two different beams ...
the outer beams are loaded by the external reaction only ... easy enough to calc displacements,
the inner beams deflects relative to its ends (where there's shear and moment into the smaller beam) ... easy enough to calc displacements,
i think you'll use the slope and the end of the smaller (outer) beam as a boundary condition for the inner (larger) beam.
add the two together.