OT:
The answer to the file organization business is - Wiki. They are typically built over a database, so can be handled that way, but also expose links to other information as well as content searches. For example, I've used it to record drawing contents, which include drawing notes. I can link directly from notes to related information, such as specs, and because the back-links are automatic, when a spec is viewed I see all the documents that refer to that spec. Because forward links are created ahead of creating the linked page, it means that there's no need to stop and deal with extraneous information until it is required, at which time -all- forward links become live without having to revisit all the pages that are home to those links.
I'd give up CAD if forced to choose between CAD and the Wiki.
The main development over other schemes is that in the Wiki I can record where the info came from and why it was important. As far as I'm concerned folders is where information goes to die.