Of course the second floor shears, moments and axial forces are larger than at the roof. The building is secured to its foundations at ground level. Are you sure you understand basic engineering concepts, FBD's and all?
I don't know what you learned in University, but the seismic story shear (with the simplest first harmonic) is a function of magnitude of seismic acceleration, mass of the story, and distance above ground. That is why those seismic shears increase as you go upward, and the roof shear may be proportionately a bit smaller because the roof may be lighter than the floors.
Stiffness attracts moment, so yes the moment in the beams increases , and the story drift decreases because of the larger EI's of the beams and columns.