It depends on how many parts you have, and how many people are doing the work.
If you have a reasonable complex project, with more than thirty parts, you may want to develop some modeling guidelines. Things to consider are 1) nodes from different parts lining up, 2) the consistent resolution of details (curves, holes, thickness changes, etc), and 3) the fastening of the different parts. Also, detailed models of multiple, assembled parts don’t make much practical sense due to the large volume of output and the run times required. You may want to divide the assembly into sub assemblies based on loaded area. Or, develop a total assembly model using a reasonably coarse grid with the ability to transfer internal loads from the coarse model to detailed models of the parts.
Also, if you have a lot of parts to assemble, you may want to generate the part finite element models programmatically, in case you have to change some of your guidelines. Pick an area of your assembly with five to ten parts in multiple planes, connected with different types of fasteners, in order to evaluate/develop the modeling guidelines.