Josh - prescriptive braced walls have had the portal frame option for quite a while. These portal frames violate nearly every conceivable aspect ratio rule for any and all shear wall analysis method. So I'd bet a lot of engineers were getting push back from clients who can use it on prescriptive jobs but not on shear wall jobs. As a result, APA did testing to figure out true capacities so they could be used in engineered solutions the same way they're used in prescriptive structures - typically at garages. The OP's document is interesting, though, as it would expand it to second floor applications as well which could be beneficial. That's a research paper, though, and not really a technical note published for general design usage, so I'd have to consider it carefully.
FTAO vs. portal frame: I'd have to dig it up, but there was a research paper published recently that looked at the various FTAO methods, and of them Deikmann was the most accurate (which is why the APA excel sheet is based on it), but it falls apart when you lose the wall segment below the opening. Pretty much every analysis method was too inaccurate to make FTAO for door openings a reasonable design philosophy choice.