I am having a little trouble understanding what you are actually trying to do, but ALL analyses start in much the same way:
1) Develop the geometry of your object
2) Apply a mesh to the geometry
a) Determine the type of mesh needed (beam, plate, brick)
b) Determine the mesh size or automesh parameters
c) Verify mesh continuity
d) Check for areas of needed refinement
3) Determine and apply boundary conditions
4) Determine and apply loads
5) Analyze
6) Confirm results (testing, hand analyses, engineering judgement, etc.)
7) Refine mesh and reanalyze (this is referred to as a "mesh sensitivity" test and I've seen it done many different ways)
The boundary conditions and loads vary depending on the part installation, application, and analysis type, but all analyses are pretty much: geometry, mesh, boundary conditions and loads, analyze, post-process.
I would suggest that you develop guidelines for any CAD models that would be developed. For instance, will you import IGES files or STEP files? If so, make sure you know what parameters need to be exported from the CAD software. IGES should be trimmed surface (144 entities, I think). If you do assemblies, which works better for the information that you want to import.
Or, are you building all models in FEMPRO. If so, there are many "Tips and Tricks" to efficiently modeling in FEMPRO. Some of these would be helpful, but perhaps you should establish precision information.
For the mesh, will you require quad element meshes, or are triangular meshes acceptable? Can you accept automeshes that result in only 12 elements around a bolt hole? Or do you require a minimum of 18? Or do you not want to put bolt holes in global models knowing that you will analyze them by hand? If so, how will you extract fastener loads? There are also guidelines for when you should use brick elements instead of plates, and how will you model beams? Are the beams large enough that they should be modeled as plates, or do they really follow beam theory?
Boundary conditions: When are symmetry conditions appropriate? Should you analyze with fixed boundary conditions or pinned, or both and average the results?
Loads: Do you attempt to balance the loads so that you use a minimum of boundary conditions and do you apply the loads as pressures instead of point loads? What is the best method of applying thermal loads? If you have an air gap in the middle of a part, do you ignore it, or do you have a process for handling the heat transfer through the air?
Post-processing: When you have a high stress concentration, when do you believe it? Do you separate the thermal stress and the static stress, or do you need to combine them?
There are MANY, MANY issues I could bring up, but I would need to know more about your product and what you do to analyze them to narrow down the types of guidlines that you may need to develop. You may be able to find some on the web that would be applicable to your situation, or you may be able to modify some generic thoughts.
There is an FEA forum on Eng-Tips. You may want to check in to it. You can often gain a great deal of understanding just by reading about other software packages.
Respectfully,
Garland
Garland E. Borowski, PE
Star Aviation