I would also strongly suggest checking the building envelope characteristics to see if they conform to the plans and specs. All too often, what seems like a poorly performing HVAC system and temperature control issue goes right back to a bad envelope - somebody put less insulation in the wall to save $$, the windows were substituted with lower performing windows to save $$, and some really badly thermally bridged construction details were used that compromised the overall thermal resistance of the walls and roof.
Re-commission the building envelope first, including blower door testing, THEN re-commission the HVAC and controls.
I can remember back 30 years ago when I got my first "too cold in the front office" complaint, and of course it was the heating engineer that was assumed to be at fault. I popped some ceiling tiles along the front outside wall and saw snow blowing in through cracks at unsealed building envelope construction at the soffit to wall interface. Pictures taken, report written, back up to the General Contractor and Architect to deal with. This has happened more often than not over the years when I get the too hot/too cold calls.