Hi c89666,
you are right about choosing nodes for RBE2 and actually it is the same for RBE3. But in DOFs level there is a different between RBE2 & RBE3, In RBE2 the independent DOFs (on the single node in the middle of hole) are all 6 DOFs, but in RBE3 you should specify the apropriate DOF(s) and this DOF(s) is called REFC(reference DOFs component), besides that you must specify the wighting factor. May be your pre-processor refers this DOF also as independent DOF.
Another therms in NASTRAN for those DOFs are m-set for dependent DOFs and n-set for independent DOF.
Hope it can help you
regards