C20? That not a CT; thats a current sensor. ;-)
A generator is not the place for low quality CTs. For slavag, a C20 CT will support a standard burden of 0.2[Ω] at 100A secondary without saturation, but there is also an assumed X/R in that and on a generator it is highly likely that the X/R will be considerably higher.
My thoughts:
Available ground fault current is much too high, but unfortunately all too common.
Hybrid grounding as mentioned by dpc could save you a restack, but at 2MW may not be considered economically viable.
Generator differential with good CTs doesn't need to wait for anything else, but you have to know that the CTs can never saturate.
Full differential (6 CTs) is better than ground differential (4 CTs) and the more ground resistance (otherwise a good thing) the more poorly ground differential will work, particularly with the breaker open.
For the single resistor between a common neutral bus and ground, you could add a neutral disconnect switch, key interlocked with the generator breaker. That way when a generator is off-line for servicing you could disconnect it from the neutral once you have also locked out the breaker.
With what I've learned over the years, for that size generator, if starting a new installation, I'd buy the less expensive 480V generator and use those savings (and probably a bit more) on the purchase of a unit transformer. There is a 12.47kV generator installation I designed once that I was sorely disappointed when the project was canceled. The longer it's been since then the more I'm glad it was never built, because it would have had solidly grounded generators.
I'm now on the other side of the table and it is my job to tell customers that want to connect their generation to our system that it has to look effectively grounded at the point of common coupling. Above 480V (or 600V where that is used) solidly grounded should never be used, low impedance grounded should be avoided if at all possible (much easier for new installations than existing) and high resistance grounded coupled to a unit transformer is the gold standard. The hybrid grounding systems are a vast improvement over the low resistance grounded systems.