Protected zones are usually (roughly) 2x the beam depth for moment frames, and L/4 of braces in braced frames (I think...maybe L/8?) and the gussets of braced frames (typically intermediate and special systems, and BRBFs). SidePlate connections also have very particular protected zones in the most highly stressed portions of the connection assembly.
They're more for preventing other trades from making incidental attachments to the steel in the yielding portions of moment frame beams and braces and/or gussets of braced frames. "known" attachments in the zone are allowed, like headed studs for composite beams, welding deck edge angles, puddle welds, that sort of 'minimally invasive' attachment.
E.g., the metal stud contractor ALWAYS wants to attach metal studs to braces with PAFs. Which is fine, as long as it's outside of the protected zone. That sort of attachment (or a MEP contractor drilling through a flange for a pipe hanger or whatever) can cause stress concentrations and lead to fractures which would/will compromise the integrity of the SFRS.
Tons of special requirements for demand critical welds and generally any member of SFRS. Materials must conform to specific toughness requirements (v-notch tests etc), specific dimensional requirements for the cuts and bevels, smoothness of the welded surface. It'll make your head spin.