DukeoAces...
I worked many MIL acft and their weapons pylons... this is a very strange and potentially damaging action, in humble opinion.
Drill and tap a pylon for what purpose???
This is potentially a risky high fatigue issue, since tapped threads are notoriously poor in tension-fatigue. I would be LESS agitated if I knew a thread-insert or stud was being installed and that it was for a low-stress/fatigue application...
Be extremely careful regarding base material type [aluminum is prone to chipping, CRES is prone to gummy/galling action and titanium is exceptionally hard], the tapping process [flood lubricant, tap quality/sharpness, depth of penetration, etc] and post-tap NDI [visual, measured-thread profile and eddy current or penetrant] for cracks, chips, irregular thread shape, etc.
Also strongly recommend You have an option if tapping operation is defective...
Regards, Wil Taylor