Loui1,
I have to side with structuralaggie on this one. Don't mix wood when everything else is steel. I have been providing connection details for the light gauge truss industry for the past 4 years and I always hated seeing a wood nailer being spec'd out on top of steel beams and masonry walls in the contract drawings.
Using a wood nailer creates a problem of what fasteners, more importantly, how many fasteners to use for attachment. The norm is #10 screws with some type of light gauge bent plate. #10 screws have very low pull-out values in wood. The truss connections will be dictated by the uplift value on the trusses anyway.
Try using some type of HSS spacers, 1-1/4" steel plate, or build up a light gauge metal spacer. You will use fewer fasteners and not have to worry about the interaction between the fire treated wood and the steel.
Don't let the contractor bully you on this. If you don't want to use wood, tell him no. It's your building design.