This is an interesting topic of which I have gone around and around with our local DEQ regarding storm intensity vs the NRCS design storms. In chapter 1 of the TR-55 manual, it states "Therefore, the rainfall distributions
were designed to contain the intensity of any
duration of rainfall for the frequency of the event
chosen. That is, if the 10-year frequency, 24-hour
rainfall is used, the most intense hour will approximate
the 10-year, 1-hour rainfall volume."
I guess it is all in how you define your thunderstorm in terms of rainfall intensity and storm duration. The NRCS storms are based on a 24-hour event, and are volume-driven, not necessarily intensity-driven. A brief, intense thunderstorm may produce a short-lived, high flow runoff, but in terms of an NRCS storm (total rainfall) it may be much less significant than you would think.
A better comparison would be to the IDF curves for your area. Depending on where you are, this info may be available on line through NOAA.