TheNewGuy12345,
I graduated with a BSME, and my first job out of college was as a systems engineer in the defense industry. I think this is definitely a case where “your mileage may vary,” but I can tell you that I absolutely did not like systems engineering. Like most engineering fields, systems engineering is going to be different at every company. At the company I worked at, systems engineers were basically project managers for their specific system. You were responsible for coming up with an overall layout for your system, and weighing different “big picture” factors such as weight, cost, schedule, etc. At its core, it felt like the nuts and the bolts of the job were endless, unproductive meetings. Almost no actual analysis work was required. I became concerned pretty quickly that my skills were going to erode, and if I spent more than a year or two in this environment, I would be pigeonholed as a systems engineer. I was able to find another job (internal company switch) as a design engineer which I really enjoyed. After about two and a half years in that position, I took a job as a structural analyst, which is what I wanted to do coming out of college.
To answer your questions, I think whether you are able to switch from systems to mechanical or aero has a lot to do with the actual experience you gain as a systems engineer. If you are at a company like SparWeb talks about, where you aren’t really very different than the aero and mechanical guys, then you will be gaining valuable skills regardless of your title. If you are at a company like I started out at, after a few years you might find it difficult to switch. One other thing I want to point out – I am sure this varies from company to company, but I found it surprisingly easy to switch from one department to another at my company. Most of the people in the design engineering department I switched to had much more impressive resumes than me, and I don’t think I ever would have gotten hired directly into that department. But switching to that department internally was as easy as meeting someone in the department, him mentioning they had an opening and talking to his boss, me indicating I was interested, and then his boss talking to my boss and taking care of all the paperwork. So it might be good to look into how easy it is to transfer internally at the company you are taking this new job. That might be your best option for making a discipline switch, if you decide you would like to. I hope this helps.