Personally, if I had the opportunity, I'd be using whatever data capture is available on the relay, and aggregate the loads that way.
One of my former employers used to use summation CTs for metering applications, although as the equipment was LV, changing them was nowhere near as challenging as dealing with dead tank equipment. They had 4 primary inputs, all at the same ratio, and as a result all the primary side CTs had to be the same ratio. They also restricted the number of primaries thus decisions on number of feeders and so on were (partially) influenced by the summation CTs. I've heard of just paralleling CTs into equipment without using summation CTs, but never seen it done.
I'd not be feeding protection class CTs into them, rather I'd use metering CTs as inputs. Custom primaries like ScottyUK has asserted would work, but make any changes or upgrades more painful.
Its much easier to either use dedicated metering (which was done on one or two sites), or use whatever data is available from the relay, and then collate that data for total load flow. Of course, if the relays aren't capable of providing the data, then that's a different story. Whether it would be cheaper to upgrade the relays or change the CTs is debatable.