I just checked the 747 CMM. For the inlet cowl the gaps between panels is .02 to .08 with a sealant applied in the gaps after installation.
Just a reference. If this is unmanned and high altitude and high speed this would probably be a fair rule of thumb. If it is lower speed I think the tolerance could be even looser.
-Kirby
Kirby Wilkerson
Remember, first define the problem, then solve it.