Where I practice, the soil conditions are highly variable. We routinely have to deal with inhomogeneous sand-gravel-clay (SGC) mixtures having variable amounts of carbonate cementation. In those cases I believe the presence of coarser clasts (gravels) can throw off CPT values and if the soil is not clast-supported, some direct shear or in situ tests are warranted. (Some practitioners discount the value of direct shear tests as not representative, subject to loading complexities, susceptible to sample disturbance, not realistic, and so on. Such statements have some truth to them, but have always struck me as no more compelling than similar statements that can be made about other, widely-practiced soil laboratory tests.)
It's not just about non-ideal soils (SGC mixtures), though. It's about using published correlations for any type of soil without thoroughly understanding the applicability of those correlations.
What I am really concerned about is the implication that mechanical properties are derived in a deterministic way from CPT data, when the CPT correlations used for them are actually empirical. For example, what is the justification for basing the in-situ shear strength of an SGC mixture on published CPT correlations developed on sands, if the data supporting those correlations do not include representative SGC mixtures?
On the other hand, if one references large-scale in situ testing of representative soils, or conducts one's own shear testing program to correlate the properties in a site-specific way, then I believe the CPT data can be useful to widen the scope of the testing and the results could be called deterministic.