What is the sequence of the processes for establishing the block location, and the subsequent gear alignment?
I'm having some difficulty imagining a bearing block that can't be bolted securely against thrust loads. A full sized feature via a machined block resting in a register on the main housing is the way to handle emergencies. Dowels Fitted to ensure alignment are fine, and even sized as duplicate system to handle loads. Varying loads mean Wiggling parts, even if only on a micro-wiggle scale. Wiggling parts restrained primarily by Dowels will fret and wear the mating faces, dowels, and dowel holes and someday be loose. Ask any Aircooled VW racer about their doweled crankshaft and flywheel. They will describe with pride that they doubled the number of crank/flywheel dowels from 4 to 8, using a fancy fixture to attempt to create 16 coaxial holes.
If their motor was so powerful those holes get beat up, they fit oversize line-reamed dowels, or really stepped up and payed to have a taper OD fit added, or simply bought a crankshaft with a proper bolted flange.
VW and Porsche abandoned dowels as a significant flywheel attachment detail in the 60s, as soon as their engines exceeded 100 HP or 4 cylinders.
Ask any Chevy or Ford or Dodge racer about what they had to do to upgrade their 6 or 8 bolted flywheel attachment, and they may have bought some better bolts for $20.
Is the block really a cap, with the bearing bore half in the block, and half in the main housing?
Even if my calculator says the shear from the thrust can be handled by dowels, I keep picturing a significant moment being generated too, trying to pry the block off the housing, and the bolt preload had better be up to the task.