Agree with others....problematic design.
Designing for deflection of the anticipated water depth is a problem in and of itself. Ponding creates progressive and cumulative deflections...the more it deflects, the more it ponds, then the more it deflects...and so on until collapse.
Next, though I'm not sure of your location, but building codes in the US require that overflow scuppers in parapet walls and interior drains must be no less than 2" above the top of the primary drain, but no more than 4" above the top of the primary drain. Your 6" variation would exceed this.
As JC noted, an overflow drain near the primary would be better.
I would design this by dividing the roof into 4 quadrants and place a primary drain and an overflow drain in each quadrant. This provides redundancy in the event of a clogged drain, and it changes your slope elevation difference to 1-1/2".