flame,
If I understand EBF's pre-tension application correctly then I disagree with your statement that "...some bolts will be subjected to increased tension over and above their pre-tension". If the bolts are pre-tensioned, the act of pre-tensioning will impart compression into the base. Upon application of an external load this precompression must be first overcome before any additional tension is applied to any individual anchor rods.
Very similar to a prestressed concrete tension member - the initial P/A will helps with deformation control under external tension forces. The additional stress in any line of anchor rods needs to be analysed by considering the increment in strains, remembering to account for the initial pre-compression that will be imparted into the concrete at time of pre-tensioning.
EBF - I am not familar with directly similar applications to what you discuss, but pre-tensioned tensioned anchors rods (aka prestressed ground anchors) have been done before. Example - 4 x vertical rock anchors fixing a concrete foundation base (maybe a crane base), where the rock anchors are pre-stressed and locked off prior to application to any external loads. Depending on the pre-tension levels you will probably require 150 ksi (1000 MPa) threaded high-tensile bar.