Part of the problem appears to be sloppy terminology. "Opaque," in optical parlance, implies NO transmission. Most, if not all, NIR transmitter covers are "clear" red, i.e., they will look red with bright backlighting, and while dark, they are not "opaque."
That said, they are usually sufficiently dark enough to prevent the average person from seeing through the window into the circuitry. That said, anyone truly interested in the circuitry will simply remove the cover, or, use a NIR configured-camera to see inside.
TTFN
FAQ731-376