First thing is to figure out what category, and thus which module is applicable to your pressure vessel. From there on you can determine the involvement of the NoBo. Each category gives a choice of module to use. Per category, some modules are aimed at custom design, and some at mass production design (so you dont have to invite a nobo for each vessel you make). If it's mass production, you can choose to apply for a EC design/type certificate, which allows you to manufacture vessels within a certain range of the certificate. Otherwise, choose a module for custom design.
Contact the NoBo immediately, so they can review, where applicable, each step of the process. Tell them your new to this. Itll cost you a few bucks, but itll cost you more if in the end it turns out you did something incorrect. They may also assist in making up the right documents for the technical file.
For category I and II, resp. module A and A2, involvement will be little (for module A its even zero).
Wrt the manual, it's important to know that the manufacturer, or it's authorised representative in the EU market, is required to apply CE, and that party must also draw up the manual. They must also draw up the manual. There is some info in the PED itself wrt details for what needs to be in the manual, but the
PED guidelines provide more detail to this respect (when Im at work tomorrow I can give you the guideline numbers which deal with this matter).
The EU Declaration of Conformity together with the manual are 2 minimum document requirements the manufacturer has to hand over to the user. Other documents like drawings, calculations, WPS & WPQ, 3.1 certificates are also oftenspecified by the user, but are not a PED requirement. The PED only requires the manufacturer to keep a copy of these files for 10 years in their technical dossier.
Sometimes customer's can have their involvement in writing the manual, when it comes to very specific details on certain equipment, but usually it's pretty straightforward. If you google for mass produced PED vessels, Im sure there will be manufacturers who have a copy of their manual on the interwebs, so you can review this to get an idea of minimum details of the manual. One further thing to know is that a lot of conclusions from the risk analysis which you must perform, can be copied into the PED (e.g. how the vessel shall be protected against over pressure protection - the user must use a PSV to handle this).
I know this is much info, but I cant make it more comprehensible than this. You just need to read the PED and start understanding it yourself. I know ASME provides courses aimed at the new PED (2014/68/EU) together ASME VIII pressure vessel design. Furthermore, some NoBo's provides seminars on how the PED works, which can also be useful.
If you have any more specific questions, Ill be happy to help you further.