Well, you already answered your own question: you are using GD&T parallelism.
I don’t know what your level of expertise in GD&T is, so I just give a few pointers to begin with:
1. GD&T can be used on assembly drawings; there is nothing wrong with that.
2. GD&T is dealing with features, not parts. Features are material surfaces, something you can touch.
3. GD&T is based on functional requirements, so describe it in such terms as “surface “a” on the part 1 has to be parallel to surface “b” on the part 2. Surface “b” then will become what is known as “datum” and you will specify parallelism of surface “a” with relation to surface “b” to be so-and-so.
If you could describe your problem with finer detail I am sure we could give you more detailed advice as well.