One reason for using the calculated zero-sequence settings, at least for Schweitzer relays, is that the default settings all use the calculated zero-sequence (G) settings instead the residual (N) settings. Schweitzer application guides that I've seen use the G settings. If you use the N settings, you have to take care to change every reference. For example, the ground enabled pushbutton on distribution line protection SEL-351S relays controls the 51G1 element with the default settings. If you use the residual 51N1 element in the trip equation without changing the ground enabled logic, it won't work as expected. Other settings like event report triggering have to be changed as well.
I think that theoretically, there should be an preference to using the directly measured residual CT current instead of using a calculated value, but there probably is no practical advantage.