I think I know what you are saying. NPT threads are tapered and the depth that a fitting tightens to is dependent on how deep you tap and how tight you make the joint.
Do you just drill a hole and then tap with a pipe tap, or do you also taper ream first? For a 1/8-27 NPT you should drill with an 11/32" bit, then ream with a taper pipe reamer (3/4 in. to the foot). The deeper you ream, the deeper the tap will go and the deeper the plug will seat.
As long as the female material is thick enough and the plug is tightened to the same torque, it will seal the same. What you don't want is to go so deep that the plug protrudes on the inside wall, since this means that some of the threads aren't mating and you might not get a good seal
Don
Kansas City