Yeah, I might be going out on a limb here, but to heck with it.
The only way a bureaucrat can lose his job is if he actually makes a judgment call. That's just the nature of the regulatory environment. Following the rules ad-absurdum not only ensures you don't lose your job, it positions you well for promotion. I suspect you have run into one of these people. They're quite common, in truth.
So the natural thing to do is to rant and rave about how stupid their request is, but the better thing to do is try to see the issue from their point of view. They're a bureaucrat looking after their job security, so they want you to provide them some sort of documentation they can point to that shows they followed the "no rise rules" in your design review.
So here's what I would do. First I'd try to get a hold of the hydrology study for the lake, presuming there was one. That study probably had a stage storage table in it somewhere, just subtract the volume of the posts from the lake storage, show the reviewer that the stage storage didn't change due to roundoff error, and submit a 'compliance study' with them that acts as an amendment to the approved hydro study on file. If such a study doesn't exist, then compensate for the volume of the posts by digging a few wheelbarrows full of dirt out of the shore somewhere to compensate.
If the reviewer wants HEC-RAS for this, then make a painstakingly detailed effort to explain to your client how unreasonable the reviewer is being and ask him what approach he'd like to take. If it gets that far, then it might not be an engineering issue at all. The whole thing could be political, and may need to involve his boss.
The two most likely scenarios I see are either A) you ran unto Ultimate Bureaucrat and just need to work it out with him somehow, or B) the owner pissed off local government and the issue isn't the dock at all, it's something else.
This sort of thing is what makes engineering fun, right?
Hydrology, Drainage Analysis, Flood Studies, and Complex Stormwater Litigation for Atlanta and the South East -