Al, The NACA submerged inlet was my inspiration for my first VG patent in 1984. The idea was: If thetrailing edge of the floor of a NACA duct is made re-entrant with the original flow control surface, (instead of leading to the interior of the body to take air onboard) you have an exquisitly low-drag vortex generator because you create then release a pair of counter-rotating vortices onto the skin - without any protrusion. The vortices are formed from the slowest, low-energy air available, but because they are forced vortices with solid-body rotation, they are strong & useful. For more info, see my original U.S. patent 4,455,045 which I sold to Cessna in 1992.
I originally used NACA ducts on my Indy Eagles in the early 1970's and discovered that they could be souped-up a bit by erecting lips onto the sidewalls that protruded into the boundary layer. That adds a bit of device drag of course, but does create a larger vortex along the inside of each sidewall to assist the inlet in providing a good mass flow despite the adverse pressure gradient of a downstream heat exchanger for example.
At Wright Patterson, there is an F-86 with its fuselage NACA duct "assisted" by the addition of several tiny conventional vane VG's on the fuselage skin immediately adjacent to the NACA duct edges! Obviously an attempt to improve it. - - mrvortex