A couple details to add:
Yes, laminar separation is rare; it requires (as you can imagine) very low Re flow. The only place I've run into it is the design of airfoils for small, slow model airplanes and human-powered aircraft. Google 'laminar separation bubble' if you're interested in examples.
A classic wind tunnel method for finding laminar/turbulent transition is to simply paint the test article with kerosene or a similar 'heavy' solvent. The article is tested while still wet. Regions with a laminar boundary layer will remain wet for a much longer time than regions with a turbulent boundary layer--transition is thus marked by the boundary of wet and dry regions on the article. Simple, but a little tricky, subjective, and time-dependent.
A slightly improved method (that I've seen, but never had to use) is to add a dye (a fine pigment would probably work as well) to the kerosene. Once the turbulent regions have dried, the solvent in the laminar region continues to flow aft to the wet/dry transition and accumulate. The test is run until all solvent has evaporated, and you should be left with lines of dried crud to indicate transition. This would probably be more practical for full-scale testing.
For interest's sake, one other way to find the transition point would be to take advantage of the fact that a turbulent boundary layer has a much higher convective heat transfer rate than a corresponding laminar boundary layer. So, you could heat the test article, put it into the flow, and measure the stream-wise surface temperature distribution. The sharp stream-wise drop in temp would indicate transition. I have it in my head that I've seen this before, but I can't find any reference to it, so I may have just dreamed it; either way, I think it's an interesting idea. Probably wouldn't be too practical for one-off testing, though.
Regards