Per Figure 5-7A Note 2, only the flange side need to be machine-finished. Per Table 5-3, the thicknesses of the flange provided are "Minimum Thickness of Bolting Flange After Finishing." So, if you require a specific machining allowance, that must be added to the values listed in the table.
Note: There is a typographical error in the 12th edition page 5-34. Figure 5.7a is incorrectly shown as "Table 5.7a - Shell Manhole."