There are other contributors better suited to answer you question than I. But, I will throw in my two cents.
It sounds to me that you are asking, "why do hole dimensions change from day to the next?"
If this what you are asking, I will try to answer. Focal point and beam quality. There is a post a few weeks back where someone did an excellent job explaining focal point and its relationship to the top of the material and width of the beam, kerf. If your focal point changes due to a decision your operator made, then the machine should be able to compensate for that with "cutter comp".
It is my opinion that spots on an optic, focus lens specifically, will cause the mirror/lens to absorb energy instead of transmit. I believe when the focus lens heats up it expands and changes the focal point. Change in focal point = change in beam width.
Another idea. Beam quality. If there are any contaminants in the beam delivery system, the beam gets bigger. Blooming is the term I use. For CO2 lasers carbon dioxide or maybe even carbon monoxide would be and example. This two can change the kerf.