Absolutely. It is superseded by AS5202.
There is not a word about the callout "MACH".
I wonder if it is covered in ARP 4296 which is referenced on AS5202.
My company's cheapo IHS subscription doesn't include ARP4296.
If you looked at the MS33649 specification you would have seen there are two types of bosses. A raised surface and recessed surface. Many people confuse the recessed surface as a machined port. I suspect that is what your case is.