if you don't have different allowable +ve and -ve moments, which you "could" have as different sign moments put different signed stresses into the section (with different allowables) ... then use the absolute value of the moment.
what section are we talking about ... metal, wood, RC ?
"Hoffen wir mal, dass alles gut geht !"
General Paulus, Nov 1942, outside Stalingrad after the launch of Operation Uranus.