Louie,
Sorry, I slightly misinterpreted your original question. I'd have to say once again that you'd want your lid as far away from the bell mouths as space allows. Unfortunately I don't have any hard data at hand, but my reasoning goes something like this:
We know from basic aero/fluid dynamics, that air does not like turning corners. Typically, an air stream that is forced to turn more than 8-10 degrees becomes turbulent. If our filter/lid assembly is too close, then all of our incoming charge will be forced to make a sharp (nearly 90 degree) turn to enter the throttle bells. This is not good. If we made use of an assembly that provided more clearance, then a larger percentage of our charge would be able to make a straighter shot.
Pat's theory has merit, but seams a little on the short side to me. If I understand it correctly, that would imply that an 80mm throttle bell would require only 20mm of clearance between the opening and the lid. Appears rather small to me. I would say as a guess, that you need to be looking at 50% of the bell diameter. But I'll be the first to admit, that it's a guess.
In any case, it's a problem that can be solved with some cardboard, duct tape, and a few hours on the dyno.
Good Luck,
Bryan Carter