harvey13,
Having done industrial ventilation for several years, there is no program that I'm aware of. If you are needing information for design of an exhaust system, or ventilation systems, I suggest you get a copy of Industrial Ventilation by the ACGIH (American Conference of Governmental Industrial Hygienists). This is the standard book for industrial applications. This will give you all you need to design and balance the system. Also, I reccommend you get a copy of the SMACNA duct standards for high pressure exhaust systems, both round and rectangular. An industrial ventilation system will operate at higher, maybe much higher, pressures than a normal HVAC system. Also, duct construction becomes paramount. Chances are good you will be moving particulate-laden air, which requires clean duct construction; no tags, pop rivets inside duct, no sheet metal screws holding dampers in place, etc.
The book contains all the fan data, velocity reccomendations and hood design you are going to need. It also has a section on dust collectors; wet, dry, cyclonic, bag filters, etc. Oh yeah, something else, when you size your duct work, you will use velocity to size the duct, not static regain or equal pressure method like with a HVAC system.
Sorry I got a little long-winded, I worked in the field for about 12 years. Hope this helps,
Brad (bman289)